rs72642161 chr1:2345774 T>C
- Sequence
aagctcacgccagcagagtcactg[T/C]tcacaggccctgccaggggaaagc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NCOR1_HUMAN MTG16_HUMAN ARI1B_HUMAN TAL1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | 2.13 | -2.03 | 1.33 | n/a | n/a | |||
| MTG16_HUMAN | 1.82 | -2.12 | 1.50 | n/a | n/a | |||
| ARI1B_HUMAN | 1.67 | -1.93 | 1.33 | n/a | n/a | |||
| TAL1_HUMAN | 1.70 | n/a | 1.33 | n/a | No Hit | |||
| HTF4_HUMAN | 1.80 | -1.59 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid