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rs72645877 chr1:15601611 G>T

Sequence
tccgtcttaaaaaaacaaaagatt[G/T]ctaagtggttactacacacatttg
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN CEBPA_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN 2.15 -2.43 2.5·10-41.00 1.50 n/a No Hit
CEBPA_HUMAN 2.18 -2.79 5.3·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Transverse Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid Whole_Blood

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