rs72656914 chr1:150579726 C>T
- Sequence
aaaggggaaaggggcggcagcttc[C/T]ggagggttgcgcacggcacctacc
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- SP1_HUMAN E4F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | 1.26 | -0.18 | 1.47 | -0.82 | Weak Concordant | |||
| E4F1_HUMAN | 2.06 | -1.74 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg