rs72775928 chr10:11874824 T>C
- Sequence
tggacaagccctgctttcaaatag[T/C]tgaggaaagaagacagagctgcaa
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN GRHL2_HUMAN USF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.77 | n/a | 1.33 | n/a | n/a | |||
| GRHL2_HUMAN | 0.22 | 1.19 | 1.89 | n/a | No Hit | |||
| USF2_HUMAN | 1.51 | 2.19 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid