rs72788548 chr10:19489053 G>A
- Sequence
tctcagcagctcggagggtggagg[G/A]gcggcagcgccaggcaccgcgcac
- ASB in cell types
- gastroesophageal sphincter
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.26 | 1.34 | 1.39 | n/a | No Hit | |||
| NRF1_HUMAN | -1.50 | 1.67 | 1.33 | 0.16 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Pituitary, Thyroid