rs72789210 chr16:69057920 C>T
- Sequence
agcacagtccaaccacagactacg[C/T]gattcagcaacttcccacaatgta
- ASB in cell types
- GM12878 (female B-cells) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- ARNT_HUMAN IKZF1_HUMAN ZN687_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | -2.55 | 2.49 | 1.00 | 8.29 | Concordant | |||
| IKZF1_HUMAN | -1.86 | 1.61 | 1.33 | n/a | No Hit | |||
| ZN687_HUMAN | -2.17 | 1.99 | 1.33 | n/a | n/a | |||
| IKZF2_HUMAN | -1.00 | 1.57 | 1.42 | n/a | n/a | |||
| BACH1_HUMAN | -2.19 | 2.10 | 1.33 | 2.60 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Spleen