rs72790722 chr10:43595350 G>T
- Sequence
actggcttcttttgcttcctctgg[G/T]actttccctttaactctgtgtctg
- ASB in cell types
- L1236 (Hodgkin lymphoma) GM12878 (female B-cells)
- ASB for transcription factors
- NFKB1_HUMAN NFKB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFKB1_HUMAN | 2.57 | -2.84 | 1.33 | -3.98 | Concordant | |||
| NFKB2_HUMAN | 1.89 | -1.62 | 1.33 | -4.30 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Muscle_Skeletal