rs72798636 chr5:134506253 C>T
- Sequence
ctggcccagccctcttccctgtgc[C/T]cagctcctccccatggaagaaagg
- ASB in cell types
- breast tumor tissue HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- ESR1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.23 | -1.06 | 2.25 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.26 | -1.18 | 1.33 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg