rs72835437 chr17:49191944 C>G
- Sequence
ctgagtgttatctcagcagtccca[C/G]ctggtggtttttaattaggcacac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte COLO-320 (colon adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN AHR_HUMAN TFAP4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.34 | 0.10 | 1.82 | -5.38 | Concordant | |||
| AHR_HUMAN | -1.77 | 1.93 | 1.33 | n/a | No Hit | |||
| TFAP4_HUMAN | n/a | 2.24 | 2.00 | 3.56 | Concordant |
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Motif analysis
