rs72954380 chr2:159615212 C>A
- Sequence
ctctgactcttcaaacacttcctt[C/A]cccttctcaaatcccaattctggg
- ASB in cell types
- monocyte-derived macrophages GM12878 (female B-cells) breast tumor tissue
- ASB for transcription factors
- SPI1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.40 | -0.41 | 2.00 | 0.56 | Weak Discordant | |||
| ESR1_HUMAN | 1.78 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood