rs73058468 chr3:45708708 C>T
- Sequence
gacaatttcttctcgattgttatt[C/T]tttgttgtcaagctgtgtagctaa
- ASB in cell types
- LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.96 | -0.01 | 1.46 | n/a | No Hit | |||
| ANDR_HUMAN | 1.44 | 0.20 | 1.48 | 1.08 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid