rs730775 chr6:44264337 A>G
- Sequence
gaggaagggttaagtgagggagtg[A/G]gacacgacagttagtgggactggg
- ASB in cell types
- K562 (myelogenous leukemia) periferal blood macrophages
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.11 | 0.84 | 2.07 | -0.29 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP coronary artery calcification (cac), eye color, irritible bowel syndrome, rheumatoid arthritis, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Coronary, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid