rs730870 chr5:126539301 A>G
- Sequence
acctcctggatacaaagtcaacac[A/G]actcacttccctgctaaacagatg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) foreskin keratinocyte T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN SMC3_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.20 | 1.80 | 2.18 | n/a | No Hit | |||
| SMC3_HUMAN | 0.93 | -0.17 | 1.94 | n/a | n/a | |||
| GATA3_HUMAN | -3.72 | 2.12 | 2.50 | n/a | No Hit |
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