rs730977 chr5:181173645 T>C
- Sequence
cattgtgatggcacaggtatccca[T/C]gcaggtttccgtagtgtagtggtt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) VCaP (prostate carcinoma)
- ASB for transcription factors
- HDAC2_HUMAN MNT_HUMAN GCR_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | -0.60 | 2.35 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.64 | 1.67 | 2.25 | n/a | n/a | |||
| GCR_HUMAN | -1.41 | 1.68 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.69 | 1.74 | 2.00 | n/a | n/a |
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