rs730979 chr5:181173527 T>G
- Sequence
tccaggtgctgaaacgtgcttttt[T/G]tgtgtgttcatgctcattaacaaa
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- EGR1_HUMAN HDAC1_HUMAN MNT_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | n/a | 3.20 | 2.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.85 | 1.81 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.13 | 1.71 | 2.25 | n/a | n/a | |||
| SMCA4_HUMAN | -0.20 | 1.83 | 2.00 | n/a | n/a |
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