rs731499 chr20:44210821 G>A
- Sequence
ggcggcccgcgcctcgggagtcgc[G/A]ttgcgcctgcgcactccggcatgc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) CD14+ monocytes HEK293T (embryonic kidney)
- ASB for transcription factors
- STAT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.06 | -3.23 | 2.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.72 | 1.51 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood