rs731826 chr19:49877601 T>G
- Sequence
ctgaaaaatggtttcacccgctcc[T/G]tctctagaacgggtcgggccgcta
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- USF1_HUMAN CTCF_HUMAN ZN316_HUMAN MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 0.90 | -0.04 | 1.43 | n/a | No Hit | |||
| CTCF_HUMAN | 0.45 | 0.58 | 1.28 | n/a | No Hit | |||
| ZN316_HUMAN | 1.86 | -1.04 | 2.00 | n/a | n/a | |||
| MAX_HUMAN | 0.97 | 0.05 | 1.67 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.68 | -0.23 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood