rs731835 chr19:58387069 T>C
- Sequence
agggcaactacggggtagcggaca[T/C]ccgccaggcacgcttctagggccg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) Jurkat (T-cells) A549 (lung carcinoma)
- ASB for transcription factors
- GABP1_HUMAN NR2C1_HUMAN NRF1_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 0.98 | n/a | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | 0.90 | n/a | 1.78 | n/a | No Hit | |||
| NRF1_HUMAN | 2.03 | -0.33 | 1.90 | n/a | No Hit | |||
| ELF1_HUMAN | 2.80 | -2.01 | 1.54 | n/a | No Hit | |||
| GABPA_HUMAN | 1.84 | 0.20 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), resistance to kuru in aged women despite likely exposure, rheumatoid arthritis, sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood