rs732510 chr16:1943476 A>G
- Sequence
tggaaactcccagggaccacccct[A/G]ggccgcttccccaaggccccgccc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN EGR1_HUMAN HDAC1_HUMAN ZBT7A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.30 | 1.26 | n/a | No Hit | |||
| EGR1_HUMAN | -0.92 | 1.50 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.48 | 1.60 | 2.00 | n/a | n/a | |||
| ZBT7A_HUMAN | -0.38 | 0.91 | 1.57 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, height, ldl cholesterol, serum creatinine, total cholesterol, triglycerides, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid