rs733342 chr17:82864204 A>G
- Sequence
gagtcatctcttgtgtgatttatc[A/G]gcttcacttgtgcttccagggctc
- ASB in cell types
- K562 (myelogenous leukemia) monocyte-derived macrophages
- ASB for transcription factors
- MEIS2_HUMAN KDM1A_HUMAN PKNX1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 0.69 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | -1.24 | 1.96 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | n/a | 2.12 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.83 | n/a | 2.50 | n/a | No Hit | |||
| MNT_HUMAN | -0.62 | 1.53 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Thyroid, Uterus, Whole_Blood