rs733468 chr1:89804845 T>C
- Sequence
acagcatctgacactagagggcgc[T/C]ccgtgagaaggctggctacacaag
- ASB in cell types
- K562 (myelogenous leukemia) HeLa Kyoto (cervical adenocarcinoma) GM12878 (female B-cells) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- SMC3_HUMAN HDAC1_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 0.73 | -0.02 | 1.46 | n/a | n/a | |||
| HDAC1_HUMAN | -0.57 | 1.56 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -1.17 | 1.58 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood