rs73360407 chr17:83051611 C>G
- Sequence
ctaagggctgctcagggcggagac[C/G]ccgtaggtgagcccgagaggcggt
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) MDA-MB-453 (breast adenocarcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- CLOCK_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | -3.23 | 2.64 | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.71 | -1.63 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Prostate, Stomach, Testis, Thyroid, Whole_Blood