rs7355146 chr1:202018984 T>C
- Sequence
cgtgactctccctgccctggccac[T/C]acctcccccacacaccacacacat
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) ZR-75-1 (invasive ductal carcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- SMCA4_HUMAN HDAC2_HUMAN ATF3_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | -2.87 | 2.23 | 2.75 | n/a | n/a | |||
| HDAC2_HUMAN | -1.40 | 2.16 | 3.00 | n/a | n/a | |||
| ATF3_HUMAN | n/a | 2.00 | 3.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.66 | 1.77 | 2.83 | n/a | n/a |
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