rs735822 chr13:75635825 T>G
- Sequence
ggggagcgtgggaggggacggcgc[T/G]cacctggcggctgggccggatcgc
- ASB in cell types
- GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma) HEK293 (embryonic kidney) keratinocytes
- ASB for transcription factors
- BHE40_HUMAN SNAI2_HUMAN HTF4_HUMAN COT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | -1.86 | 1.03 | 1.33 | 1.34 | Weak Concordant | |||
| SNAI2_HUMAN | -0.65 | 1.89 | 1.50 | 3.86 | Concordant | |||
| HTF4_HUMAN | -2.13 | 2.05 | 1.33 | -1.31 | Weak Discordant | |||
| COT1_HUMAN | -1.77 | 1.59 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina