rs737985 chr22:20021555 C>T
- Sequence
cagctctggcgcccggtcactctg[C/T]cccctacccgcggcctgctgcggg
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts 786-O (renal carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CHAP1_HUMAN ZFX_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.16 | 0.20 | 1.26 | -2.53 | Concordant | |||
| CHAP1_HUMAN | n/a | 2.34 | 4.00 | n/a | n/a | |||
| ZFX_HUMAN | 0.11 | 1.19 | 1.61 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 2.00 | 4.00 | n/a | n/a | |||
| NRF1_HUMAN | n/a | 2.50 | 4.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen