rs73959112 chr2:112942817 G>T
- Sequence
gtgtgtatactctgccccctgtca[G/T]cacatgactcatgccaaagagttt
- ASB in cell types
- foreskin keratinocyte coronary artery smooth muscle
- ASB for transcription factors
- CTCF_HUMAN RFX5_HUMAN JUND_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.00 | n/a | 2.00 | -1.88 | Weak Concordant | |||
| RFX5_HUMAN | 2.08 | -1.99 | 1.33 | -2.10 | Concordant | |||
| JUND_HUMAN | -1.53 | 1.34 | 1.33 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg