rs7412249 chr1:16905456 A>G
- Sequence
tggagactctcttaacagtctgtt[A/G]tccctaggaaggataagagcaaga
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- BMI1_HUMAN NCOR1_HUMAN MEF2B_HUMAN MAF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BMI1_HUMAN | 3.64 | n/a | 3.00 | n/a | n/a | |||
| NCOR1_HUMAN | 1.52 | -0.94 | 2.11 | n/a | n/a | |||
| MEF2B_HUMAN | 2.18 | -2.45 | 1.33 | n/a | No Hit | |||
| MAF_HUMAN | -3.60 | 2.16 | 2.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.82 | -0.20 | 2.22 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood