rs7417106 chr1:976215 A>G
- Sequence
ctgtggctgcggcgcccttgcccc[A/G]cctgccggcggaagtagcggatgg
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP (prostate carcinoma) LNCaP C4-2B (prostate carcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN ZNF2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 0.41 | 1.43 | -2.74 | Concordant | |||
| ZNF2_HUMAN | 2.45 | n/a | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.63 | -1.42 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood