rs741899 chr8:133453484 C>G
- Sequence
gagctggcctggaaaagcgggcgg[C/G]ggggccgactgcagcatagcacca
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) SK-N-AS (neuroblastoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.16 | 1.56 | n/a | No Hit | |||
| RAD21_HUMAN | 1.28 | -0.08 | 1.52 | n/a | n/a | |||
| VEZF1_HUMAN | n/a | 2.75 | 2.00 | 3.07 | Concordant |
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Motif analysis
