rs742458 chr16:1342876 T>C
- Sequence
gggcctgaggaggggatgtggggc[T/C]gtcccgcctccacccacgacagac
- ASB in cell types
- HEK293 (embryonic kidney) keratinocytes GM12878 (female B-cells)
- ASB for transcription factors
- SNAI2_HUMAN ZN341_HUMAN ZN398_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.45 | -2.50 | 1.33 | n/a | No Hit | |||
| ZN341_HUMAN | 2.29 | n/a | 2.00 | -2.14 | Concordant | |||
| ZN398_HUMAN | 2.32 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood