rs744267 chr12:107685669 G>A
- Sequence
cacacagcccagaccagcccacgt[G/A]gattcctcgcccggctgcttccgc
- ASB in cell types
- neural cell P493-6 (B-cell lymphoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- MXI1_HUMAN MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MXI1_HUMAN | 1.03 | n/a | 4.00 | -9.14 | Concordant | |||
| MAX_HUMAN | 1.41 | -1.44 | 1.75 | -8.48 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood