rs745303 chr2:219543916 G>A
- Sequence
ccggaagtgccccctcctcagtgc[G/A]ggagagggagacgccgggggcgga
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) GM12878 (female B-cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- KLF5_HUMAN HTF4_HUMAN GABPA_HUMAN ERG_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KLF5_HUMAN | 2.09 | n/a | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | 1.89 | n/a | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.02 | 0.62 | 1.71 | n/a | No Hit | |||
| ERG_HUMAN | -0.52 | 1.19 | 2.00 | n/a | No Hit | |||
| SP3_HUMAN | 0.79 | -0.79 | 1.00 | -0.95 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis