rs7459020 chr7:48088999 G>A
- Sequence
ctgctggttctttacaattgccca[G/A]ctgctctgcagaggcgagaagcaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) CD14+ monocytes
- ASB for transcription factors
- CEBPG_HUMAN STAT1_HUMAN JUN_HUMAN ZN394_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPG_HUMAN | n/a | 2.99 | 1.75 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.67 | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | -0.43 | 1.19 | 2.00 | n/a | No Hit | |||
| ZN394_HUMAN | 2.41 | -3.29 | 1.50 | n/a | No Hit | |||
| ATF3_HUMAN | -0.99 | 1.55 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, birth weight, cystatin c in serum
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood