rs746401 chr19:45995569 G>A
- Sequence
gaggtcttaggtggaggggaaggg[G/A]cttctctcgggggagagtgggctg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- HDAC1_HUMAN MNT_HUMAN ZN148_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | -1.06 | 1.80 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.54 | 1.40 | 1.96 | n/a | n/a | |||
| ZN148_HUMAN | 2.18 | -2.91 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Stomach, Thyroid, Whole_Blood