rs74730741 chr19:49097927 A>T
- Sequence
ttagtgtttgctttcctggctctc[A/T]ttcttagccttggggcagcttggt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) epidermal keratinocytes
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.22 | 0.87 | 2.13 | n/a | No Hit | |||
| RAD21_HUMAN | 1.28 | 0.43 | 1.96 | n/a | n/a | |||
| HDAC1_HUMAN | -0.98 | 1.25 | 2.00 | n/a | n/a |
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