rs747460 chr1:41496358 C>G
- Sequence
cctcccgaccaattttgggcaaag[C/G]aggggcggcggcgcgctacgtgcc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) LNCaP (prostate carcinoma)
- ASB for transcription factors
- PRDM9_HUMAN MAZ_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM9_HUMAN | -0.09 | 1.78 | 2.00 | n/a | n/a | |||
| MAZ_HUMAN | n/a | 2.40 | 2.00 | 1.97 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Testis