rs748350 chr8:22010323 A>G
- Sequence
cggcctctgttccggctctccccc[A/G]gctttcgccgccgcgcgcaggcgc
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) GM12878 (female B-cells) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- FOXK2_HUMAN JUN_HUMAN TYY1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.05 | 2.64 | 1.33 | n/a | n/a | |||
| JUN_HUMAN | -0.15 | 1.08 | 1.71 | n/a | No Hit | |||
| TYY1_HUMAN | 1.80 | -0.60 | 1.78 | n/a | No Hit | |||
| GABPA_HUMAN | 1.55 | 0.76 | 1.56 | 0.07 | Weak Discordant | |||
| CTCF_HUMAN | 0.67 | 0.42 | 1.37 | n/a | No Hit |
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Motif analysis
