rs749226 chr1:160078884 A>G
- Sequence
catccctgagatgatggtgatgac[A/G]gtgacaatgatgatgaccatgaag
- ASB in cell types
- erythroid cells MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -0.25 | 2.19 | 1.61 | -2.24 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Spleen, Stomach, Testis, Whole_Blood