rs749284 chr12:109760725 A>T
- Sequence
ctgaagcacggggctgccacaagg[A/T]ctgcggaagggcaaggccatgagg
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RARA_HUMAN SMAD4_HUMAN RXRB_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | n/a | 3.34 | 1.50 | -0.56 | Weak Discordant | |||
| SMAD4_HUMAN | n/a | 2.79 | 1.33 | n/a | No Hit | |||
| RXRB_HUMAN | n/a | 2.62 | 1.33 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.02 | 2.52 | 1.33 | n/a | No Hit | |||
| ESR1_HUMAN | 0.31 | 1.81 | 2.00 | n/a | No Hit |
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Motif analysis
