rs750374 chr2:172969349 T>C
- Sequence
ggcagaggattaagcaactactta[T/C]gcaagcaatcatttaatcacagct
- ASB in cell types
- mesenchymal stem cells
- ASB for transcription factors
- CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.57 | n/a | 1.33 | -0.63 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, hdl cholesterol, infant head circumference, major depressive disorder, major depressive disorder (males), recurrent early onset major depressive disorder, waist height ratio squared
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Esophagus_Muscularis, Ovary, Skin_Sun_Exposed_Lower_leg