rs750768 chr17:74776474 T>A
- Sequence
tcagcgcgcgcgaaaaaggtgggc[T/A]gtggggccggcgcatgcgcgctgc
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) HCT-116 (colon carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- SIN3B_HUMAN EGR1_HUMAN MNT_HUMAN E2F1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SIN3B_HUMAN | n/a | 2.40 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 0.92 | 1.61 | 2.00 | -0.32 | Weak Discordant | |||
| MNT_HUMAN | -1.94 | 1.65 | 2.00 | n/a | n/a | |||
| E2F1_HUMAN | 0.35 | 1.07 | 1.55 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Testis, Thyroid