rs7513575 chr1:241640334 T>C
- Sequence
cggcgcgctccgcactgggtgggg[T/C]tggggctccgccgcctgctctagc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293T (embryonic kidney) thymus-derived CD34- cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- BC11B_HUMAN CTCF_HUMAN P66B_HUMAN E2F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | -3.41 | 2.15 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.39 | 1.01 | 1.21 | 2.08 | Concordant | |||
| P66B_HUMAN | n/a | 2.57 | 2.50 | n/a | n/a | |||
| E2F1_HUMAN | 1.88 | -1.81 | 1.50 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
