rs7523070 chr1:28314262 C>T
- Sequence
aaggtcactgggtggcccatgtca[C/T]cttgagctcctggacagaaaggtg
- ASB in cell types
- HepG2 (hepatoblastoma) breast tumour metastasis
- ASB for transcription factors
- ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -1.73 | 1.63 | 2.38 | -1.46 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, diastolic blood pressure (dbp), obesity with early age of onset (age >2), systolic blood pressure (sbp), tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood