rs75315904 chr1:173867913 G>A
- Sequence
ttcagggtgaccttagcagacaaa[G/A]gctggagcgccccaaaacccgcaa
- ASB in cell types
- K562 (myelogenous leukemia) tibial nerve MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CLOCK_HUMAN KDM5B_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.45 | 2.39 | 1.33 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.45 | n/a | 2.00 | n/a | No Hit | |||
| KDM5B_HUMAN | 1.85 | n/a | 2.75 | n/a | n/a | |||
| SP1_HUMAN | 1.99 | -0.06 | 2.17 | n/a | No Hit | |||
| NCOA1_HUMAN | 2.07 | -3.10 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid