rs754066 chr19:1905357 G>A
- Sequence
cgtcgtgctccgcggctccaggcg[G/A]agacgaggcggggtgaggtgggtt
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes cranial neural crest cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- STAT1_HUMAN CREB1_HUMAN RFX1_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.46 | n/a | 2.50 | n/a | No Hit | |||
| CREB1_HUMAN | 0.10 | 0.69 | 1.28 | n/a | No Hit | |||
| RFX1_HUMAN | 0.29 | 0.90 | 1.53 | n/a | No Hit | |||
| AP2A_HUMAN | 1.55 | n/a | 2.00 | 1.67 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach