rs7540775 chr1:227318816 G>A
- Sequence
ccgggccgcgccgggagctgcggc[G/A]ggactgggcgcaggctgggaactg
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN ZFHX2_HUMAN ZIC2_HUMAN ZN335_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.01 | n/a | 2.50 | n/a | No Hit | |||
| ZFHX2_HUMAN | n/a | 3.64 | 4.00 | n/a | n/a | |||
| ZIC2_HUMAN | n/a | 2.17 | 3.00 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.77 | 4.00 | 1.78 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood