rs75408989 chr1:152185794 A>G
- Sequence
tttggaggaattacgttcagtatc[A/G]tcagggagcaaatccctgtgcatg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN CREB1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.48 | 1.84 | 2.02 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.09 | 1.15 | 2.46 | n/a | No Hit | |||
| CREB1_HUMAN | -2.77 | 2.13 | 2.25 | n/a | No Hit | |||
| RAD21_HUMAN | -2.67 | 2.04 | 2.50 | n/a | n/a | |||
| SUZ12_HUMAN | n/a | 2.16 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid