rs7542685 chr1:227542752 C>A
- Sequence
gggaggtggcgtccctgtccccag[C/A]caggcggcagcgcgaagctgcctc
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) GM12867 (female B-cells) lymphoblastoid cells
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MDA-MB-453 (breast adenocarcinoma) | n/a | 2.23 | 3.00 | |||
| GM12867 (female B-cells) | n/a | 2.02 | 2.00 | |||
| lymphoblastoid cells | 1.24 | -0.15 | 1.33 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis