rs754292 chr19:16589002 C>T
- Sequence
ctgacccggaggagtagacagaga[C/T]agccaaggtcaagaacagaagcaa
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.21 | 0.79 | 1.95 | |||
| GM12878 (female B-cells) | 0.56 | 0.35 | 1.27 |
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Motif analysis
No data available
Genetic associations
GRASP acute lung injury following major trauma, comorbid depressive syndrome and alcohol dependence, fasting blood glucose, hdl cholesterol change with statins, multiple sclerosis, refractive error, schizophrenia, stabilized warfarin dose
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood