rs7544851 chr1:1679085 T>C
- Sequence
ccacctcgaaggctgccccctggc[T/C]ggggacgctgtcacagcacccgct
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia) pancreas foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN NR2C1_HUMAN COT1_HUMAN KAISO_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.86 | 0.33 | 1.45 | 0.00 | Weak Discordant | |||
| NR2C1_HUMAN | 1.79 | -1.84 | 1.33 | 1.22 | Weak Discordant | |||
| COT1_HUMAN | 1.19 | 0.03 | 1.54 | 1.08 | Weak Discordant | |||
| KAISO_HUMAN | 1.51 | 0.40 | 1.56 | n/a | No Hit | |||
| ZN143_HUMAN | 2.37 | -2.17 | 1.00 | n/a | No Hit |
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Motif analysis
